species:   Drmel
pid:       MI0000418
parent:    dme-mir-307a
paralog:   
locus:     NT_033778.4:9621251-9621338
matures:   ['UCACAACCUCCUUGAGUGAGCGA', 'GACUCACUCAACCUGGGUGUGAUG']
srr:       SRR11906542
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram NT_033778.4:9621251-9621338

0 out of bounds
1580 alignments
1576 proper strand
1541 stranded perfect matches

           ************************                  ***********************            
UGUCUUGCUUUGACUCACUCAACCUGGGUGUGAUGUUAUUUCGAUAUGGUAUCCAUCACAACCUCCUUGAGUGAGCGAUAGCAGGACA
((((((((((((.(((((((((...((.(((((((.((((.......))))..))))))).))...)))))))))))).)))))))))
-------------------------------------------------------UCACAACCUCCUUGAGUGAGCGA---------- l=23 a=45 c
-----------GACUCACUCAACCUGGGUGUGAUG----------------------------------------------------- l=24 a=0 c*
-------------------------------------------------------UCACAACCUCCUUGAGUGAGC------------ l=21 a=909 ma
-------------CUCACUCAACCUGGGUGUGAUG----------------------------------------------------- l=22 a=0 ma*

---------------------------------------------------------ACAACCUCCUUGAGUGAGCG----------- l=20 a=1 
---------------------------------------------------------ACAACCUCCUUGAGUGAGCGA---------- l=21 a=5 
---------------------------------------------------------ACAACCUCCUUGAGUGAGCGAU--------- l=22 a=1 
--------------------------------------------------------CACAACCUCCUUGAGUGAG------------- l=19 a=4 
--------------------------------------------------------CACAACCUCCUUGAGUGcG------------- l=19 a=1 
--------------------------------------------------------CACAACCUCCUUGAGUGAGC------------ l=20 a=14 
--------------------------------------------------------CACAACCUCCUUGAGUGAGCG----------- l=21 a=112 
--------------------------------------------------------CACAACCUCuUUGAGUGAGCG----------- l=21 a=1 
--------------------------------------------------------CACgACCUCCUUGAGUGAGCG----------- l=21 a=1 
--------------------------------------------------------CACAACCUCCUUGAGUGAGCGA---------- l=22 a=57 
--------------------------------------------------------CACAACCUCCUUGAGUGAGCGu---------- l=22 a=2 
--------------------------------------------------------CACAACCUCCUUGAGUGuGCGA---------- l=22 a=1 
--------------------------------------------------------CACAACCUCCUUGAGUGAGCGAU--------- l=23 a=10 
--------------------------------------------------------CACAACCUCCUUGAGUGAGCGAa--------- l=23 a=2 
--------------------------------------------------------CACAACCUCCUUGAGUGAGCGAaA-------- l=24 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUG--------------- l=18 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUGA-------------- l=19 a=5 
-------------------------------------------------------UCACAACCUCCUUGAGUGu-------------- l=19 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUGAG------------- l=20 a=48 
-------------------------------------------------------UCACAACgUCCUUGAGUGAGC------------ l=21 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUGAGC------------ l=21 a=909 (ma)
-------------------------------------------------------UCACAACCUCCUUGAGUGgGC------------ l=21 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUGAGu------------ l=21 a=2 
-------------------------------------------------------UCACAACuUCCUUGAGUGAGC------------ l=21 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUGAGa------------ l=21 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUGcGC------------ l=21 a=1 
-------------------------------------------------------UCgCAACCUCCUUGAGUGAGC------------ l=21 a=1 
-------------------------------------------------------UCACAACCUCCUUGAuUGAGC------------ l=21 a=1 
-------------------------------------------------------UCACAACCUCCaUGAGUGAGCG----------- l=22 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUGAGCG----------- l=22 a=301 
-------------------------------------------------------UCACAACCUCCUUGAGUGAGCGA---------- l=23 a=45 (c)
-------------------------------------------------------UCACAACCUCCUUGAGUGAGCGu---------- l=23 a=9 
-------------------------------------------------------UCACAACCUCCUUGAGUGAGCGc---------- l=23 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUGAGCGg---------- l=23 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUGAGCGAU--------- l=24 a=4 
-------------------------------------------------------UCACAACCUCCUUGAGUGAGCGAg--------- l=24 a=1 
-------------------------------------------------------UCACAACCUCCUUGAGUGAGCGAa--------- l=24 a=1 
------------------------------------------------------uUCACAACCUCCUUGAGUGAGC------------ l=22 a=1 
-----------------------------------UUAUUUCGAUAaGGUAUCCA--------------------------------- l=20 a=1 
-----------------------------------UUAUUUCGAUAUGGUAUCCA--------------------------------- l=20 a=2 
-----------------------------------UUAUUUCGAUAUGGUAUCCAU-------------------------------- l=21 a=3 
----------------------------------GUUAUUUCGAUAUGGUAUCCAU-------------------------------- l=22 a=4 
---------------------------------UGUUAUUUCGAUAUGGUAUCCAUC------------------------------- l=24 a=1 
------------ACUCACUCAACCUGGGUGUG-------------------------------------------------------- l=20 a=3 
------------ACUCACUCAACCUGGGUGUGA------------------------------------------------------- l=21 a=1 
------------ACUCACUCAACCUGGGUGUGAU------------------------------------------------------ l=22 a=3 
------------ACUCACUCAACCUGGGUGUGAUG----------------------------------------------------- l=23 a=1 
-----------GACUCACUCAACCUGGGUGUG-------------------------------------------------------- l=21 a=3 
-----------GACUCACUCAACCUGGGUGUGA------------------------------------------------------- l=22 a=3 

mb-01111
ax-1011111
ku-11
ss-111111111110
fn-111
